Horse breed discrimination using machine learning methods

• Authors: M. Burocziova , J. R?ha
• Languages of publication: EN

Abstracts

EN

Genetic relationships and population structure of 8 horse breeds in the Czech and Slovak Republics were investigated using classification methods for breed discrimination. To demonstrate genetic differences among these breeds, we used genetic information ? genotype data of microsatellite markers and classification algorithms ? to perform a probabilistic prediction of an individual's breed. In total, 932 unrelated animals were genotyped for 17 microsatellite markers recommended by the ISAG for parentage testing (AHT4, AHT5, ASB2, HMS3, HMS6, HMS7, HTG4, HTG10, VHL20, HTG6, HMS2, HTG7, ASB17, ASB23, CA425, HMS1, LEX3). Algorithms of classification methods ? J48 (decision trees); Naive Bayes, Bayes Net (probability predictors); IB1, IB5 (instance-based machine learning methods); and JRip (decision rules) ? were used for analysis of their classification performance and of results of classification on this genotype dataset. Selected classification methods (Naive Bayes, Bayes Net, IB1), based on machine learning and principles of artificial intelligence, appear usable for these tasks.

Keywords

EN

BREED DISCRIMINATION; GENETIC DIVERSITY; HORSE; MICROSATELLITE

Discipline

• GENETICS: GENETICS

• Publisher: Institute of Plant Genetics, Polish Academy of Sciences
• Journal: Journal of Applied Genetics
• Year: 2009
• Volume: 50
• Issue: 4
• Pages: 375-377

Contributors

author

M. Burocziova

author

J. R?ha

• Document Type: ARTICLE
• Publication order reference: M. Burocziova, Institute of Animal Physiology and Genetics, AS CR, v.v.i, Rumburska 89, 277 21 Libechov, Czech Republic