Direct and indirect effects of crustacean zooplankton (cladocerans and copepods) are important regulators of ciliate communities, especially in eutrophic systems. However, it is not clear whether pseudodiaptomids (e.g., Schmackeria), one of the dominant calanoid copepods in Chinese lakes, effectively impacts natural ciliate communities. The impacts of small-bodied cladocerans (e.g., Bosmina) on ciliates are also controversial. We performed an incubation experiment using winter lake water from Lake Chaohu to assess the structuring effects that crustacean zooplankton have on natural ciliate populations. The presence and absence of cladocerans (Bosmina sp.) and copepods (Schmackeria inopinus) were alternated in four treatments. Both Bosmina sp. and Schmackeria inopinus had substantial impacts on ciliate abundance, biomass, and community structure. The response of ciliates was different in the presence of Bosmina sp. compared with Schmackeria inopinus and varied among categories such as the ciliate population, relative body size and functional feeding group. Our results also highlight the importance of interference and exploitative competition among metazooplankton groups.
The application of molecular phylogenetics to research on protists has substantially transformed our understanding of their evolution and systematics. More recently, advances in molecular technology, including high throughput sequencing, has opened new avenues for genomic analyses that elucidate major aspects of protistan biology across all levels of biological organization from cellular to ecosystems. This is a review of recent advances (particularly in the last two decades) of transcriptomic research on heterotrophic and autotrophic protists within three major topics: (i) Physiology and metabolism, (ii) Development and life cycles, and (iii) Environmental and ecological studies. Emphasis is placed on selection of representative research that highlights findings across diverse taxonomic groups within each of the three topics. Examples are drawn from parasitic as well as free-living taxa to provide a broad overview of some of the research strategies, and major findings, that have emerged from application of transcriptomics and related techniques in advancing our understanding of protistan biology.
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