Full-text resources of PSJD and other databases are now available in the new Library of Science.
Visit https://bibliotekanauki.pl

PL EN


Preferences help
enabled [disable] Abstract
Number of results
2025 | 61 | 2 | 237-254

Article title

Computational screening of potential ulcer inhibitors from Moringa olefera Lam. leaves

Content

Title variants

Languages of publication

EN

Abstracts

EN
The genus Moringa Adans. comprises 13 species, of which Moringa oleifera Lam. native to India and cultivated across the world. Moringa is a well valued plant that is cultivated in tropical environments. It is well known for its nutritional values and ability to attack many diseases. This study explores the ulcer inhibiting ability of Moringa olefera via in-silico method. The chemical contents of Moringa olefera were revealed though GC-MS experiment. The molecules found in the plant were subjected to ulcer screening using molecular docking method. The molecular docking result showed that Kaempferol (-6.6 kcal mol-1, -10.7 kcal mol-1) and Catechin (-6.6 kcal mol-1, -10.5 kcal mol-1) gave very good docking scores in 2 ulcer proteins, Helicobacter pylori adhesin HopQ type I (PBD 6gbg) and Protein HP1028 from the human pathogen Helicobacter pylori lipocalin family (PDB 4inn), the results even surpassed the control drug Omeprazole which gave binding scores of (-6.6 kcal mol-1, -9.1 kcal mol-1) in the two proteins respectively. Absorption, distribution, metabolism elimination and toxicity (ADMET) screening were undertaken on omeprazole, Kaempferol and Catechin to ascertain their drug properties. The result showed that the compounds are good drug lead candidates for the inhibition of ulcer wounds in human. None of the compounds violated the Lipinski’s rule of five. To define the reactivities of the compounds towards the proteins, density functional theory calculations were performed, the results showed very values of quantum chemical parameters in all the compounds indicating that the transfer of electrons between them and the proteins would be easy and this aids reactivity and function ability of chemical compounds as drugs.

Keywords

Year

Volume

61

Issue

2

Pages

237-254

Physical description

Contributors

author
  • Department of Chemistry, Imo State University, P M B 2000 Owerri, Imo State, Nigeria
author
  • Department of Chemistry, Alvan Ikoku Federal University of Education, P.M.B. 1033 Owerri, Imo State, Nigeria

References

  • [1] Kavitt R T, Lipowska A M, Anyane-Yeboa A, Gralnek I M. Diagnosis and Treatment of Peptic Ulcer Disease. Am J Med. 2019; 132, 4, 447-456. doi: 10.1016/j.amjmed.2018.12.009
  • [2] Ravi Kumar V R, Rathi S, Singh S, Patel B, Singh S, Chaturvedi K, Sharma B. A. Comprehensive Review on Ulcer and Their Treatment. Chinese Journal of Applied Physiology, 39, e20230006. DOI: 10.62958/j.cjap.2023.006
  • [3] Tulsi T, Akshita D. A review on peptic ulcer disease: diagnosis and management approach. International Journal of Creative Research Thoughts 2023; 11, 6, 2320-2882
  • [4] Xie X, Ren K, Zhou Z, Dang C, Zhang H. The global, regional and national burden of peptic ulcer disease from 1990 to 2019: a population-based study. BMC Gastroenterol. 2022; 22, 1, 58. doi: 10.1186/s12876-022-02130-2
  • [5] Salari N, Darvishi N, Shohaimi S, et al. The Global Prevalence of Peptic Ulcer in the World: a Systematic Review and Meta-analysis. Indian J Surg, 2022, 84, 913-921. https://doi.org/10.1007/s12262-021-03189-z
  • [6] Jiajia R, Xuting J, Jiamei L, Ruohan L, Ya G, Jingjing Z, Xiaochuang W, Gang W. The global burden of peptic ulcer disease in 204 countries and territories from 1990 to 2019: a systematic analysis for the Global Burden of Disease Study 2019. International Journal of Epidemiology, 2022; 51, 5, 1666-1676, https://doi.org/10.1093/ije/dyac033
  • [7] Yudharaj P, Shankar M, Sowjanya R, Sireesha B, Ashok N E, Priyadarshini J R. Importance and uses of medicinal plants – an overview. International Journal of Preclinical & Pharmaceutical Research. 2016; 7, 2, 67-73
  • [8] Sofowora A, Ogunbodede E, Onayade A. The role and place of medicinal plants in the strategies for disease prevention. Afr J Tradit Complement Altern Med. 2013; 10, 5, 210-29. doi: 10.4314/ajtcam.v10i5.2
  • [9] Liu R, Liu J, Huang Q, Liu S, Jiang Y. Moringa oleifera: a systematic review of its botany, traditional uses, phytochemistry, pharmacology and toxicity. J Pharm Pharmacol. 2022; 74, 3, 296-320. doi: 10.1093/jpp/rgab131
  • [10] Matic I, Guidi A, Kenzo M, Mattei M, Galgani A. Investigation of medicinal plants traditionally used as dietary supplements: A review on Moringa oleifera. J Public Health Afr. 2018; 9, 3, 841. doi: 10.4081/jphia.2018.841
  • [11] Pareek A, Pant M, Gupta M M, Kashania P, Ratan Y, Jain V, Pareek A, Chuturgoon A A. Moringa oleifera: An Updated Comprehensive Review of Its Pharmacological Activities, Ethnomedicinal, Phytopharmaceutical Formulation, Clinical, Phytochemical, and Toxicological Aspects. Int J Mol Sci. 2023; 24, 3, 2098. doi: 10.3390/ijms24032098
  • [12] Kasolo J N, Bimenya G S, Ojok L, Ochieng J, Ogwal-Okeng JW. Phytochemicals and uses of Moringa oleifera leaves in Ugandan rural communities. J. Med. Plant Res. 2010; 20104, 753-757
  • [13] Dillard C J, German J B, Phytochemicals: Nutraceuticals and human health. J. Sci. Food Agric, 2000; 80, 1744-1756
  • [14] Agu P C, Afiukwa C A, Orji O U, et al. Molecular docking as a tool for the discovery of molecular targets of nutraceuticals in diseases management. Sci Rep, 2023; 13, 13398. https://doi.org/10.1038/s41598-023-40160-2
  • [15] Meng X Y, Zhang H X, Mezei M, Cui M, Molecular docking: a powerful approach for structure-based drug discovery. Curr Comput Aided Drug Des. 2011; 7, 2, 146-57. doi: 10.2174/157340911795677602
  • [16] Tohid N, Mudassar M, Sourabh C, Sushant K, Sanket S, Sourabh N, Shantanu C, Anuja P, Nilesh C. Molecular docking: types, applications and approach in novel drug design. International Journal for Research Trends and Innovation, 2023; 8, 10, 175-179
  • [17] Agu P C, Afiukwa C A, Orji O U, et al. Molecular docking as a tool for the discovery of molecular targets of nutraceuticals in diseases management. Sci Rep 2023; 13, 13398. https://doi.org/10.1038/s41598-023-40160-2
  • [18] Adindu C B, Ikezu U J M, Nwokeke U G. Exploiting the Extract Constituents of Pentaclethra Macrophylla Bentham (Ugba) Leaves in the Corrosion Inhibition of Mild Steel in Acidic Media. International Journal of Engineering Science Invention 2019; 8, 1, 60-71
  • [19] Kim S. Exploring Chemical Information in PubChem. Curr Protoc, 2021; 1, 8, doi: 10.1002/cpz1.217
  • [20] Senlin Y, Jiao L, Eng G C, Alfred T, Mohammed B, Barry M, Hong T, Hong L. Helicobacter pylori outer membrane protein families and related pathogenesis. Microbial Pathogenesis, 2025; 10.1016/j.micpath.2025.107740, (107740), (2025).
  • [21] Barison N, Cendron L, Loconte V, Proctor E A, Dokholyan N V, Zanotti G. Protein HP1028 from the human pathogen Helicobacter pylori belongs to the lipocalin family. Acta Crystallogr 2013; 69, 1387-1394
  • [22] Sree K K, Sailu S, Mohane S C. Docking-Based Virtual Screening Using PyRx Tool: Autophagy Target Vps34 as a Case Study. Academic Press, 2021; 463-477
  • [23] Duru C E, Duru A J, Adegboyega A E. In silico identification of compounds from Nigella sativa seed oil as potential inhibitors of SARS-CoV-2 targets. Bulletin of the National Research Centre, 2021; 45, 57. https://doi.org/10.1186/s42269-021-00517-x.
  • [24] Hongbin Y, Chaofeng L, Lixia S, Jie L, Yingchun C, Zhuang W, Weihua L, Guixia L, Yun T. Admet SAR 2.0: web-service for prediction and optimization of chemical ADMET properties. Bioinformatics, 2019; 35, 6, 1067–1069, https://doi.org/10.1093/bioinformatics/bty707
  • [25] Xi W, Feiyu K, Wenhui D, Jia L. Density functional theory calculations: A powerful tool to simulate and design high-performance energy storage and conversion materials. Progress in Natural Sciences: Materials and International, 2019; 29, 3, 247-255
  • [26] Ouamnina A, Alahyane A, Elateri I, Ouhammou M, Abderrazik M. In Vitro and Molecular Docking Studies of Antiglycation Potential of Phenolic Compounds in Date Palm (Phoenix dactylifera L.) Fruit: Exploring Local Varieties in the Food Industry. Horticulturae, 2024; 10, 6, 657. https://doi.org/10.3390/horticulturae10060657
  • [27] Rani V, Amudha P, Vidya R, Jayalakshmi M, Kalpana C S, Molecular Docking Analysis of 9-Octadecene, 9,12,15-Octadecatrienoic acid, Methyl Ester, Phytol, 9,12-Octadecadienoic Acid and 9-Octadecenoic Acid with Anticancer Target Enzyme Caspase 3 (PDB: 1CP3). Texila International Journal of Public Health, 2024, 12(4). DOI: 10.21522/TIJPH.2013.12.04.Art097
  • [28] Zhang Q, Chen L, Gao M, et al. Molecular docking and in vitro experiments verified that kaempferol induced apoptosis and inhibited human HepG2 cell proliferation by targeting BAX, CDK1, and JUN. Mol Cell Biochem, 2023; 478, 767-780. https://doi.org/10.1007/s11010-022-04546-6
  • [29] Ouyang Z , Zhipeng X, Research Progress on Omeprazole in the Treatment of Peptic Ulcers, MEDS Clinical Medicine Clausius Scientific Press, Canada, 2024; 5, 3, DOI: 10.23977/medsc.2024.050303
  • [30] Violeta I, Miroslav R, Biljana A, Aleksandra P, Lipinski’s rule of five, famous extensions and famous exceptions. Chemia Naissensis, Popular Scientific Article, 3, 1, 171-177
  • [31] Wu D, Chen Q, Chen X, et al. The blood–brain barrier: Structure, regulation and drug delivery. Sig Transduct Target Ther 2023; 8, 217. https://doi.org/10.1038/s41392-023-01481-w
  • [32] Alahmari A. Blood-Brain Barrier Overview: Structural and Functional Correlation. Neural Plast. 2021; 2021:6564585. doi: 10.1155/2021/6564585
  • [33] Adindu C B, Kalu G I. Elucidation of Potential Inhibitor Compounds from Zingiber officinale against Migraine Headache, World News of Natural Sciences, 2024; 55, 184-205
  • [34] Adindu C B, Kalu G I, Ikezu U J M , Ikpa C B C, Okeke P I, Molecular Docking, ADMET & DFT Predictions of Cinnamomum zylanicum for Prostate Cancer Inhibition. Journal of Materials Science Research and Reviews, 2024; 7, 3, 392-426
  • [35] Savaş K, Cemal K, A new method for calculation of molecular hardness: A theoretical study. Computational and theoretical Chemistry, 2015; 1060, 66-70
  • [36] Miar M, Shiroudi A, Pourshamsian K, Oliaey AR, Hatamjafari F. Theoretical investigations on the HOMO–LUMO gap and global reactivity descriptor studies, natural bond orbital, and nucleus-independent chemical shifts analyses of 3-phenylbenzo[d]thiazole-2(3H)-imine and its para-substituted derivatives: Solvent and substituent effects. Journal of Chemical Research. 2021; 45(1-2): 147-158. doi:10.1177/1747519820932091
  • [37] Huang Y, Rong C, Zhang R, et al. Evaluating frontier orbital energy and HOMO/LUMO gap with descriptors from density functional reactivity theory. J Mol Model 2017; 23, 3. https://doi.org/10.1007/s00894-016-3175-x.
  • [38] Nesereen T M, Ahmed M A, Rageh K H, Moez A I, Abdulrahman G A, Mortage M A. DFT, ADMET and Molecular Docking Investigations for the Antimicrobial Activity of 6,6′-Diamino-1,1′,3,3′-tetramethyl-5,5′ (4-chlorobenzylidene)bis[pyrimidine 2,4(1H,3H)-dione]. Molecules 2022; 27, 3, 620. https://doi.org/10.3390/molecules27030620

Document Type

article

Publication order reference

Identifiers

YADDA identifier

bwmeta1.element.psjd-3802160c-340e-4a8c-a29b-79efc11cc4ae
JavaScript is turned off in your web browser. Turn it on to take full advantage of this site, then refresh the page.