PL EN


Preferences help
enabled [disable] Abstract
Number of results
2019 | 2 | 1 | 85-95
Article title

Biobank Łódź – population based biobank at the University of Łódź, Łódź, Poland

Content
Title variants
Languages of publication
EN
Abstracts
EN
Biobank Laboratory of the University of Lodz is a unit in the organizational structure of the Department of Molecular Biophysics at the Faculty of Biology and Environmental Protection. It was established in 2014 as one of the results of the TESTOPLEK project. One of the main goals of the unit is to collect and share biological material of human origin and related clinical and survey data. Moreover, Biobank Laboratory conducts work in the field of genetics and molecular biology on human biological material. Biobank Laboratory gathers over 40.000 samples such as DNA, FFPE, saliva, together with their data. Data about collections is available for researchers in directories e.g. BBMRI-ERIC Directory 4.0. Since 2014, the unit belongs to the national Consortium BBMRI.pl, and since 2017 it executes a project entitled Research Infrastructure for Biobanks and Biomolecular Resources BBMRI-ERIC, co-creating the Polish Network of Biobanks. Biobank Laboratory is focused on cooperation with domestic and foreign scientific institutions and medical units, as well as entities from the local, business and public sector.
Year
Volume
2
Issue
1
Pages
85-95
Physical description
Dates
published
2019-06-04
received
2019-03-04
accepted
2019-05-19
References
  • Biobank Łódź. [cited 2019 Feb 15]; Available from: http://www.biobank.uni.lodz.pl/index.php.
  • BBMRI- ERIC Directory 4.0. [cited 2019 Feb 15]; Available from: https://directory.bbmri-eric.eu/menu/main/dataexplorer?entity=eu_bbmri_eric_collections&mod=data&attrs%5B%5D=country&attrs%5B%5D=biobank&attrs%5B%5D=collection&hideselect=true&query%5Bq%5D%5B0%5D%5Boperator%5D=SEARCH&query%5Bq%5D%5B0%5D%5Bvalue%5D=biobank%20lodz.
  • Koszarska M, Kucsma N, Kiss K, Varady G, Gera M, Antalffy G, et al. Screening the expression of ABCB6 in erythrocytes reveals an unexpectedly high frequency of Lan mutations in healthy individuals. PLoS One. 2014;9(10):e111590; Available from: http://doi.org/10.1371/journal.pone.0111590.
  • Słomka M, Sobalska-Kwapis M, Korycka-Machała M, Bartosz G, Dziadek J, Strapagiel D. Genetic variation of the ABC transporter gene ABCC1 (Multidrug resistance protein 1-MRP1) in the Polish population. BMC Genet. 2015;16:114; Available from: http://doi.org/10.1186/s12863-015-0271-3.
  • Sitek A, Rosset I, Strapagiel D, Majewska M, Ostrowska-Nawarycz L, Żądzińska E. Association of FTO gene with obesity in Polish schoolchildren. 2014;77(1):33; Available from: https://doi.org/10.2478/anre-2014-0003.
  • BBMRI.pl. [cited 2019 Feb 15]; Available from: http://www.bbmri.pl/pl/.
  • Witoń M, Strapagiel D, Gleńska-Olender J, Chróścicka A, Ferdyn K, Skokowski J, et al. Organization of BBMRI.pl: The Polish Biobanking Network. Biopreservation and Biobanking. [Review]. 2017;15(3):264-9; Available from: http://doi.org/10.1089/bio.2016.0091.
  • Faculty of Biology and Environmental Protection, University of Łódź. [cited 2019 Feb 15]; Available from: http://www.biol.uni.lodz.pl/pl.
  • University of Łódź. [cited 2019 Feb 15]; Available from: https://www.uni.lodz.pl/.
  • Biobank and Cohort Building Network. [cited 2019 Feb 15]; Available from: http://bcnet.iarc.fr/.
  • European and Middle Eastern Society for Biopreservation and Biobanking. [cited 2019 Feb 15]; Available from: https://esbb.org/.
  • Integrated Biobank of Luxembourg - Biospecimen Proficiency Testing. [cited 2019 Feb 15]; Available from: https://www.ibbl.lu/ibbl-bioservices/biospecimen-proficiency-testing/.
  • Lewczuk P, Gaignaux A, Kofanova O, Ermann N, Betsou F, Brandner S, et al. Interlaboratory proficiency processing scheme in CSF aliquoting: implementation and assessment based on biomarkers of Alzheimer's disease. Alzheimers Res Ther. 2018;10(1):87, Available from: https://doi.org/10.1186/s13195-018-0418-3.
  • CQI-IRCA. [cited 2019 Feb 15]; Available from: https://www.quality.org/.
  • Sobalska-Kwapis M, Smolarz B, Słomka M, Szaflik T, Kępka E, Kulig B, et al. New variants near RHOJ and C2, HLA-DRA region and susceptibility to endometriosis in the Polish population-The genome-wide association study. Eur J Obstet Gynecol Reprod Biol. 2017;217:106-12; Available from: http://doi.org/10.1016/j.ejogrb.2017.08.037.
  • Sobalska-Kwapis M, Suchanecka A, Słomka M, Siewierska-Górska A, Kępka E, Strapagiel D. Genetic association of FTO/IRX region with obesity and overweight in the Polish population. PLoS One. 2017;12(6):e0180295; Available from: http://doi.org/10.1371/journal.pone.0180295.
  • Ratajewski M, Słomka M, Karaś K, Sobalska-Kwapis M, Korycka-Machała M, Sałkowska A, et al. Functional Analysis of the rs774872314, rs116171003, rs200231898 and rs201107751 Polymorphisms in the Human RORgammaT Gene Promoter Region. Genes (Basel). 2017;8(4): 126; Available from: http://doi.org/10.3390/genes8040126.
  • Siewierska-Górska A, Sitek A, Żądzińska E, Bartosz G, Strapagiel D. Association of five SNPs with human hair colour in the Polish population. Homo. 2017;68(2):134-44; Available from: http://doi.org/10.1016/j.jchb.2017.02.002.
  • Rosset I, Żądzińska E, Strapagiel D, Grzelak A, Henneberg M. Association between body height and month of birth among women of European origin in northern and southern hemispheres. Am J Hum Biol. 2017;29(3):e22967; Available from: http://doi.org/10.1002/ajhb.22967.
  • Nedoszytko B, Siemińska A, Strapagiel D, Dabrowski S, Słomka M, Sobalska-Kwapis M, et al. High prevalence of carriers of variant c.1528G>C of HADHA gene causing long-chain 3-hydroxyacyl-CoA dehydrogenase deficiency (LCHADD) in the population of adult Kashubians from North Poland. PLoS One. 2017;12(11):e0187365; Available from: http://doi.org/10.1371/journal.pone.0187365.
  • Słomka M, Sobalska-Kwapis M, Wachulec M, Bartosz G, Strapagiel D. High Resolution Melting (HRM) for High-Throughput Genotyping-Limitations and Caveats in Practical Case Studies. Int J Mol Sci. 2017;18(11):2316; Available from: http://doi.org/10.3390/ijms18112316.
  • Romanowicz H, Strapagiel D, Słomka M, Sobalska-Kwapis M, Kępka E, Siewierska-Górska A, et al. New single nucleotide polymorphisms (SNPs) in homologous recombination repair genes detected by microarray analysis in Polish breast cancer patients. Clin Exp Med. 2017;17(4):541-6; Available from: http://doi.org/10.1007/s10238-016-0441-2.
  • Jarczak J, Grochowalski L, Marciniak B, Lach J, Słomka M, Sobalska-Kwapis M, et al. Mitochondrial DNA variability of the Polish population. Eur J Hum Genet. 2019; Available from: http://doi.org/10.1038/s41431-019-0381-x.
  • Sitek A, Rosset I, Żądzińska E, Siewierska-Górska A, Pietrowska E, Strapagiel D. Selected gene polymorphisms effect on skin and hair pigmentation in Polish children at the prepubertal age. Anthropol Anz. 2016;73(4):283-93; Available from: http://doi.org/10.1127/anthranz/2016/0632.
  • Pruszkowska-Przybylska P, Sitek A, Rosset I, Sobalska-Kwapis M, Słomka M, Strapagiel D, et al. Association of the 2D:4D digit ratio with body composition among the Polish children aged 6-13years. Early Hum Dev. 2018;124:26-32; Available from: http://doi.org/10.1016/j.earlhumdev.2018.08.001.
  • Rosset I, Strapagiel D, Sitek A, Majewska M, Ostrowska-Nawarycz L, Żądzińska E. Association of FTO and TMEM18 polymorphisms with overweight and obesity in the population of Polish children. Anthropological review. 2016;79(1):17-33; Available from: http://doi.org/10.1515/anre-2016-0002.
  • Pruszkowska-Przybylska P, Sitek A, Rosset I, Żądzińska E, Sobalska-Kwapis M, Słomka M, et al. The association between socioeconomic status, duration of breastfeeding, parental age and birth parameters with BMI, body fat and muscle mass among prepubertal children in Poland. Anthropol Anz. 2019; Available from: http://doi.org/10.1127/anthranz/2019/0955.
  • Kukla-Bartoszek M, Pośpiech E, Spólnicka M, Karłowska-Pik J, Strapagiel D, Żądzińska E, et al. Investigating the impact of age-depended hair colour darkening during childhood on DNA-based hair colour prediction with the HIrisPlex system. Forensic Sci Int Genet. 2018;36:26-33; Available from: http://doi.org/10.1016/j.fsigen.2018.06.007.
  • Sassi A, Popielarski M, Synowiec E, Morawiec Z, Woźniak K. BLM and RAD51 genes polymorphism and susceptibility to breast cancer. Pathol Oncol Res. 2013;19(3):451-9; Available from: http://doi.org/10.1007/s12253-013-9602-8.
  • Synowiec E, Krupa R, Morawiec Z, Wasylecka M, Dziki L, Morawiec J, et al. Efficacy of DNA double-strand breaks repair in breast cancer is decreased in carriers of the variant allele of the UBC9 gene c.73G>A polymorphism. Mutat Res. 2010;694(1-2):31-8; Available from: http://doi.org/10.1016/j.mrfmmm.2010.09.002.
  • Synowiec E, Stefańska J, Morawiec Z, Błasiak J, Woźniak K. Association between DNA damage, DNA repair genes variability and clinical characteristics in breast cancer patients. Mutat Res. 2008;648(1-2):65-72; Available from: http://doi.org/10.1016/j.mrfmmm.2008.09.014.
  • GIS Support. [cited 2019 Feb 15]; Available from: http://gis-support.com/.
  • QGIS. [cited 2019 Feb 15]; Available from: http://qgis.org.
  • metaBiobank. [cited 2019 Feb 15]; Available from: https://biobank.plgrid.pl/.
  • BioSCOOP. [cited 2019 Feb 15]; Available from: https://github.com/BiobankLab/BioSCOOP.
  • Merino-Martinez R, Norlin L, van Enckevort D, Anton G, Schuffenhauer S, Silander K, et al. Toward Global Biobank Integration by Implementation of the Minimum Information About BIobank Data Sharing (MIABIS 2.0 Core). Biopreserv Biobank. 2016;14(4):298-306; Available from: http://doi.org/10.1089/bio.2015.0070.
  • Michalska-Madej J, Dobrowolska S, Strapagiel D. Application of BBMS in the biobanks storage management. Eur J Trans Clin Med. 2018;1(Suppl.4):72; Available from: https://ejctm.gumed.edu.pl/issues/5.
  • ISBER. 2012 best practices for repositories collection, storage, retrieval, and distribution of biological materials for research international society for biological and environmental repositories. Biopreserv Biobank. 2012;10(2):79-161; Available from: http://doi.org/10.1089/bio.2012.1022.
  • EGA. [cited 2019 Feb 15]; Available from: https://www.ebi.ac.uk/ega/home.
  • National Center for Biotechnology Information. [cited 2019 Feb 15]; Available from: https://www.ncbi.nlm.nih.gov/.
  • World Medical A. World Medical Association Declaration of Helsinki: ethical principles for medical research involving human subjects. JAMA. 2013;310(20):2191-4; Available from: http://doi.org/10.1001/jama.2013.281053.
  • Polish Data Protection Authority. [cited 2019 Feb 15]; Available from: http://prawo.sejm.gov.pl/isap.nsf/home.xsp.
  • Regulation (EU) 2016/679 of the European Parliament and of the Council of 27 April 2016 on the protection of natural persons with regard to the processing of personal data and on the free movement of such data, and repealing Directive 95/46/EC (General Data Protection Regulation) 2016 [cited 2019 Feb 15]; Available from: https://eur-lex.europa.eu/legal-content/EN/TXT/?uri=celex%3A32016R0679.
  • Caban M, Strapagiel D, Dziadek J, Korycka-Machała M, Grzelak A. Principles of a New Protocol for Prediction of Azole Resistance in Candida albicans Infections on the Basis of ERG11 Polymorphisms. Curr Microbiol. 2016;73(2):172-82; Available from: http://doi.org/10.1007/s00284-016-1039-3.
  • Sitek A, Rosset I, Strapagiel D, Majewska M, Ostrowska-Nawarycz L, Żądzińska E. Association of FTO gene with obesity in Polish schoolchildren. Anthropological review. 2014;77(1):33-44; Available from: http://doi.org/10.2478/anre-2014-0003.
  • Karaś K, Salkowska A, Sobalska-Kwapis M, Walczak-Drzewiecka A, Strapagiel D, Dastych J, et al. Digoxin, an Overlooked Agonist of RORgamma/RORgammaT. Front Pharmacol. 2018;9:1460; Available from: http://doi.org/10.3389/fphar.2018.01460.
  • Pułaski L, Jatczak-Pawlik I, Sobalska-Kwapis M, Strapagiel D, Bartosz G, Sadowska-Bartosz I. 3-bromopyruvate induces expression of antioxidant genes. Free Radic Res. 2018;53(2):170-178; Available from: http://doi.org/10.1080/10715762.2018.1541176.
  • Antczak M, Płocińska R, Płociński P, Rumijowska-Galewicz A, Żaczek A, Strapagiel D, et al. The NnaR orphan response regulator is essential for the utilization of nitrate and nitrite as sole nitrogen sources in mycobacteria. Sci Rep. 2018;8(1):17552; Available from: http://doi.org/10.1038/s41598-018-35844-z.
  • Reczyńska D, Witek B, Jarczak J, Czopowicz M, Mickiewicz M, Kaba J, et al. The impact of organic vs. inorganic selenium on dairy goat productivity and expression of selected genes in milk somatic cells. J Dairy Res. 2019;86(1):48-54; Available from: http://doi.org/10.1017/S0022029919000037.
  • Karwaciak I, Salkowska A, Karaś K, Sobalska-Kwapis M, Walczak-Drzewiecka A, Pułaski L, et al. SIRT2 Contributes to the Resistance of Melanoma Cells to the Multikinase Inhibitor Dasatinib. Cancers (Basel). 2019;11(5):673; Available from: http://doi.org/10.3390/cancers11050673.
  • Płociński P, Macios M, Houghton J, Niemiec E, Płocińska R, Brzostek A, et al. Proteomic and transcriptomic experiments reveal an essential role of RNA degradosome complexes in shaping the transcriptome of Mycobacterium tuberculosis. Nucleic Acids Res. 2019; Available from: http://doi.org/10.1093/nar/gkz251.
  • Kolsut J, Borowka P, Marciniak B, Wojcik E, Wojtasik A, Strapagiel D, et al. In silico Analysis of Virulence Associated Genes in Genomes of Escherichia Coli Strains Causing Colibacillosis in Poultry. J Vet Res. 2017;61(4):421-6; Available from: http://doi.org/10.1515/jvetres-2017-0051.
  • Bakuła Z, Brzostek A, Borówka P, Żaczek A, Szulc-Kiełbik I, Podpora A, et al. Molecular typing of Mycobacterium kansasii using pulsed-field gel electrophoresis and a newly designed variable-number tandem repeat analysis. Sci Rep. 2018;8(1):4462; Available from: http://doi.org/10.1038/s41598-018-21562-z.
  • Borówka P, Lach J, Bakuła Z, van Ingen J, Safianowska A, Brzostek A, et al. Draft Genome Sequences of Mycobacterium kansasii Clinical Strains. Genome Announc. 2017;5(22):e00406-17; Available from: http://doi.org/10.1128/genomeA.00406-17.
  • Labudda L, Strapagiel D, Karczewska-Golec J, Golec P. Complete Annotated Genome Sequences of Four Klebsiella pneumoniae Phages Isolated from Sewage in Poland. Genome Announc. 2017;5(45):e00919-17; Available from: http://doi.org/10.1128/genomeA.00919-17.
  • Karczewska-Golec J, Strapagiel D, Sadowska M, Szalewska-Pałasz A, Golec P. Draft Genome Sequence of Shewanella baltica M1 Isolated from Brackish Surface Water of the Gulf of Gdansk. Genome Announc. 2016:4(3):e00611-16; Available from: http://doi.org/10.1128/genomeA.00611-16.
  • Strapagiel D, Borówka P, Marciniak B, Bakuła Z, van Ingen J, Safianowska A, et al. Draft Genome Sequences of Mycobacterium kansasii Strains 1010001454, 1010001458, 1010001468, 1010001493, 1010001495, and 1010001469, Isolated from Environmental Sources. Genome Announc. 2016 Jun;4(3):e00456-16; Available from: http://doi.org/10.1128/genomeA.00456-16.
  • Fernandes DM, Strapagiel D, Borówka P, Marciniak B, Żądzińska E, Sirak K, et al. A genomic Neolithic time transect of hunter-farmer admixture in central Poland. Sci Rep. 2018;8(1):14879; Available from: http://doi.org/10.1038/s41598-018-33067-w.
  • Lorkiewicz W, Płoszaj T, Jędrychowska-Dańska K, Żądzińska E, Strapagiel D, Haduch E, et al. Between the Baltic and Danubian worlds: the genetic affinities of a middle neolithic population from central Poland. PLoS One. 2015;10(2):e0118316; Available from: http://doi.org/10.1371/journal.pone.0118316.
  • Caban M, Strapagiel D, Bartosz G, Stączek P, Ciesielska A, Gadzalski M, et al., inventors; Univeristy of Lodz, assignee. The method of identifying pathogenic fungus species contained in a sample taken from a patient. Poland patent P. 408 734. 2018.
  • Strapagiel D, Słomka M, Majewska M, Janik K, Sobalska M, Bartosz G, inventors; University of Łódź, assignee. Method for determination of gender. Poland patent P. 406 569. 2019.
  • Strapagiel D, Słomka M, Majewska M, Janik K, Sobalska M, Bartosz G, inventors; University of Łódź, assignee. Method for determination of gender. Poland patent P. 423 420. 2019.
  • Strapagiel D, Siewierska-Górska A, Bartosz G, Żądzińska E, Sitek A, inventors; University of Łódź, assignee. Method and a set for the detection of genetic predisposition to having a certain hair colour. Poland patent P. 403 360. 2013.
Document Type
Publication order reference
Identifiers
YADDA identifier
bwmeta1.element.doi-10_31373_ejtcm_109495
JavaScript is turned off in your web browser. Turn it on to take full advantage of this site, then refresh the page.