Evidence for RNA recombination between distinct isolates of Pepino mosaic virus

• Authors: Beata Hasiów-Jaroszewska , Arnold Kuzniar , Sander A Peters , Jack A. M. Leunissen , Henryk Pospieszny
• Languages of publication: EN

Abstracts

EN

Genetic recombination plays an important role in the evolution of virus genomes. In this study we analyzed publicly available genomic sequences of Pepino mosaic virus (PepMV) for recombination events using several bioinformatics tools. The genome-wide analyses not only confirm the presence of previously found recombination events in PepMV but also provide the first evidence for double recombinant origin of the US2 isolate.

Keywords

EN

genetic diversity; recombination; PepMV

• Publisher: Polish Biochemical Society
• Journal: Acta Biochimica Polonica
• Year: 2010
• Volume: 57
• Issue: 3
• Pages: 385-388

Dates

published

2010

received

2010-03-05

revised

2010-06-18

accepted

2010-08-13

(unknown)

2010-08-19

Contributors

author

Beata Hasiów-Jaroszewska

• Institute of Plant Protection, National Research Institute, Department of Virology and Bacteriology, Poznań, Poland

author

Arnold Kuzniar

• Laboratory of Bioinformatics, Wageningen University and Research Centre (WUR), Wageningen, The Netherlands

author

Sander A Peters

• Bioscience Group, Plant Research International (PRI), Wageningen, The Netherlands

author

Jack A. M. Leunissen

• Laboratory of Bioinformatics, Wageningen University and Research Centre (WUR), Wageningen, The Netherlands

author

Henryk Pospieszny

• Institute of Plant Protection, National Research Institute, Department of Virology and Bacteriology, Poznań, Poland

References

• Alejska M, Kurzyńska-Kokorniak A, Broda M, Kierzek R, Figlerowicz M (2001) How RNA viruses exchange their genetic material. Acta Biochim Pol 48: 391-407.
• Awadalla P (2003) The evolutionary genomics of pathogen recombination. Nat Rev Genet 4: 50-60.
• Dreher TW (1999) Functions of the 3'-untranslated regions of positive strand RNA viral genomes. Annu Rev Phytopathol 37: 151-174.
• Escriu F, Fraile A, Garcia-Arenal F (2003) The evolution of virulence in a plant virus. Evolution 57: 755-765.
• Etzold T, Argos P (1993) SRS - an indexing and retrieval tool for flat file data libraries. Comput Appl Biosci 9: 49-57.
• French CJ, Bouthillier M, Bernardy M, Ferguson G, Sabourin M, Johnson RC, Masters C, Godkin S, Mumford R (2001) First report of Pepino mosaic virus in Canada and the United States. Plant Dis 85: 1121.
• Garcia-Arenal F, Fraile A, Malpica JM (2003) Variation and evolution of plant virus populations. Int Microbiol 6: 225-232.
• Hanssen IM, Paeleman A, Wittemans L, Goen K, Lievens B, Bragard C, Vanachter C, Thomma BPHJ (2008) Genetic characterization of Pepino mosaic virus isolates from Belgian greenhouse tomatoes reveals genetic recombination. Eur J Plant Pathol 121: 131-146.
• Hasiów B, Borodynko N, Pospieszny H (2008) Complete genomic RNA sequence of the Polish Pepino mosaic virus isolate belonging to the US2 strain. Virus Genes 36: 209-214.
• Hasiów-Jaroszewska B, Pospieszny H, Borodynko N. (2009) New necrotic isolates of Pepino mosaic virus representing Ch2 genotype. J Phytopathol 157: 494-496.
• Jones RAC, Koenig R, Lesemann DE (1980) Pepino Mosaic Virus a new potexvirus from pepino (Solanum muricatum). Ann Appl Biol 94: 61-68.
• Kumar S, Tamura K, Nei M (2004) Mega3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinformatics 5: 150-163.
• Lai MM (1992) RNA recombination in animal and plant viruses. Microbiol Rev 56: 61-79.
• Ling KS (2007) Molecular characterization of two Pepino mosaic virus variants from imported tomato seed reveals high levels of sequence identity between Chilean and US isolates. Virus Genes 34: 1-8.
• Lopez C, Soler S, Nuez F (2005) Comparison of the complete sequences of three different isolates of Pepino mosaic virus: size variability of the TGBp3 protein between tomato and L. peruvianum isolates. Arch Virol 150: 619-627.
• Maroon-Lango CJ, Guaragna MA, Jordan RL, Hammond J, Bandla M, Marquardt SK (2005) Two unique US isolates of Pepino mosaic virus from a limited source of pooled tomato tissue are distinct from a third (European-like) US isolate. Arch Virol 150: 1187-1201.
• Maydt J, Lengauer T (2006) Recco: recombination analysis using cost optimization. Bioinformatics 22: 1064-1071.
• Milne I, Lindner D, Bayer M, Husmeier D, McGuire G, Marshall DF, Wright F (2009) TOPALi v2: a rich graphical interface for evolutionary analyses of multiple alignments on HPC clusters and multi-core desktops. Bioinformatics 25: 126-127.
• Pagán I, Cordoba-Selles MC, Martinez-Priego L, Fraile A, Malpica JM, Jorda C, Garcia-Arenal F (2006) Genetic structure of the population of Pepino mosaic virus infecting tomato crops in Spain. Phytopathology 96: 274-279.
• van der Vlugt RPA, Stijger CCM, Verhoeven JTJ, Lesemann DE (2000) First report of Pepino mosaic virus on tomato. Plant Dis 84: 103.