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2001 | 48 | 1 | 131-135

Article title

Molecular docking-based test for affinities of two ligands toward vasopressin and oxytocin receptors.

Content

Title variants

Languages of publication

EN

Abstracts

EN
Molecular docking simulations are now fast developing area of research. In this work we describe an effective procedure of preparation of the receptor-ligand complexes. The amino-acid residues involved in ligand binding were identified and described.

Year

Volume

48

Issue

1

Pages

131-135

Physical description

Dates

published
2001
received
2000-11-2
revised
2000-12-23
accepted
2001-02-19

Contributors

  • Faculty of Chemistry, University of Gdańsk, Gdańsk, Poland
  • Faculty of Chemistry, University of Gdańsk, Gdańsk, Poland
  • Faculty of Chemistry, University of Gdańsk, Gdańsk, Poland
  • Faculty of Chemistry, University of Gdańsk, Gdańsk, Poland
  • Faculty of Chemistry, University of Gdańsk, Gdańsk, Poland

References

  • 1. Kirkpatrick, S., Gelate, C.D., Jr. & Vecchi, M.P. (1983) Optimization by simulated annealing. Science 220, 671-680.
  • 2. Cambridge Structural Database System. Cambridge Crystallographic Data Centre, Cambridge, U.K.
  • 3. Pogozheva, I.D., Lomize, A.L. & Mosberg, H.I. (1998) Opioid receptor three-dimensional structures from distance geometry calculations with hydrogen bonding constraints. Biophys. J. 75, 612-634.
  • 4. SYBYL v. 6.1 (1994) Tripos Inc., St. Louis, MO, U.S.A.
  • 5. Palczewski, K., Kumasaka, T., Hori, T., Behnke, C.A., Motoshima, H., Fox, B.A., Le Trong, I., Teller, D.C., Okada, T., Stenkamp, R.E., Yamamoto, M. & Miyamoto, M. (2000) Crystal structure of rhodopsin: A G protein-coupled receptor. Science 289, 739-745.
  • 6. AMBER 5.0 (2000) Pearlman, D.A., Case, D.A., Caldwell, J.W., Cheatham, III, T.E., Ross, W.S., Simmerling, C., Darden, T., Merz, K.M., Stanton, R.V., Cheng, A., Vincent, J.J., Crowley, M., Ferguson, D.M., Radmer, R., Seibel, G.L., Singh, U.C., Weiner, P. & Kollman, P.A., University of California, San Francisco.
  • 7. GAMESS 98 (1993) Schmidt, M.W., Baldridge, K.K., Boatz, J.A., Elbert, S.T., Gordon, M.S, Jensen, J.H., Koseki, S., Matsunaga, N., Nguyen, K.A., Su, S., Windus, T.L., Dupuis, M. & Montgomery, J.A. J. Comput. Chem. 14, 1347-1363.
  • 8. Morris, G.M., Goodsell, D.S., Halliday, R.S., Huey, R., Hart, W.E., Belew, R.K. & Olson, A.J. (1998) Automated docking using a Lamarckian genetic algorithm and empirical binding free energy function. J. Comput. Chem. 19, 1639-1662.
  • 9. Solis, F.J. & Wets, R.J.-B. (1981) Minimization by random search techniques. Mathematical Operations Res. 6, 19-30.

Document Type

Publication order reference

Identifiers

YADDA identifier

bwmeta1.element.bwnjournal-article-abpv48i1p131kz
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