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2000 | 47 | 3 | 791-806
Article title

Size, shape and secondary structure of calponin.

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Abstracts
EN
The overall size and shape of the chicken gizzard calponin (CaP) h1 molecule was investigated by dynamic light scattering (DLS) measurements. From the DLS experiments, a z-averaged translational diffusion coefficient is derived (5.75 ± 0.3) × 10-7cm2s-1, which corresponds to a hydrodynamic radius of 3.72 nm for calponin. The frictional ratio (1.8 for the unhydrated molecule and 1.5 for the hydrated one) suggests a pronounced anisotropic structure for the molecule. An ellipsoidal model in length 19.4 nm and with a diameter of 2.6 nm used for hydrodynamic calculations was found to reproduce the DLS experimental data. The evaluation of the secondary structure of CaP h1 from the CD spectra by two independent methods has revealed that it contains, on average, 23% helix, 19% β-strand, 18% β-turns and loops, and 40% of remainder structures. These values are in good agreement with those predicted from the amino-acid sequence. Predictions used for CaP h1 were applied to other isoforms of known sequences and revealed that all calponins share a common secondary structure. Moreover, the predicted structure of the calponin CH domain is identical to that found by X-ray studies of the spectrin, fimbrin and utrophin CH domains.
Publisher

Year
Volume
47
Issue
3
Pages
791-806
Physical description
Dates
published
2000
received
2000-06-06
accepted
2000-08-29
Contributors
  • Nencki Institute of Experimental Biology, Department of Muscle Biochemistry, Warszawa, Poland
  • Universität Bielefeld, Fakultät für Chemie, Physikalische Chemie 1, Bielefeld, F.R.G.
  • Nencki Institute of Experimental Biology, Department of Muscle Biochemistry, Warszawa, Poland
  • TU Chemnitz, Institut für Physik, Materialforschung und Flüssigkeiten, Chemnitz, F.R.G.
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Document Type
Publication order reference
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YADDA identifier
bwmeta1.element.bwnjournal-article-abpv47i3p791kz
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