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Number of results

Journal

2014 | 12 | 8 | 603-609

Article title

Localized mRNA translation and protein association

Content

Title variants

Languages of publication

EN

Abstracts

EN
Recent direct observations of localization of mRNAs and proteins both in prokaryotic and eukaryotic cells can be related to slowdown of diffusion of these species due to macromolecular crowding and their ability to aggregate and form immobile or slowly mobile complexes. Here, a generic kinetic model describing both these factors is presented and comprehensively analyzed. Although the model is non-linear, an accurate self-consistent analytical solution of the corresponding reaction-diffusion equation has been constructed, the types of localized protein distributions have been explicitly shown, and the predicted kinetic regimes of gene expression have been classified.

Publisher

Journal

Year

Volume

12

Issue

8

Pages

603-609

Physical description

Dates

published
1 - 8 - 2014
online
20 - 7 - 2014

References

  • [1] J. Rausenberger, C. Fleck, J. Timmer, M. Kollmann, Progr. Biophys. Molec. Biol. 100, 57 (2009) http://dx.doi.org/10.1016/j.pbiomolbio.2009.06.003[Crossref]
  • [2] O. Purcell, N.J. Savery, C.S. Grierson, M. di Bernardo, J. Roy. Soc. Interface 7, 1503 (2010) http://dx.doi.org/10.1098/rsif.2010.0183[Crossref]
  • [3] V.P. Zhdanov, Phys. Rep. 500, 1 (2011) http://dx.doi.org/10.1016/j.physrep.2010.12.002[Crossref]
  • [4] D.F.T. Veiga, B. Dutta, G. Balazsi, Molec. Biosyst. 6, 469 (2010) http://dx.doi.org/10.1039/b916989j[Crossref]
  • [5] M. Valencia-Burtona et al., Proc. Natl. Acad. Sci. USA 106, 16399 (2009) http://dx.doi.org/10.1073/pnas.0907495106[Crossref]
  • [6] J.H. Russell, K.C. Keiler, Proc. Natl. Acad. Sci. USA 106, 16405 (2009) http://dx.doi.org/10.1073/pnas.0904904106[Crossref]
  • [7] P. Montero Llopis, A.F. Jackson, O. Sliusarenko, I. Surovtsev, J. Heinritz, T Emonet, C. Jacobs-Wagner, Nature 466, 77 (2010) http://dx.doi.org/10.1038/nature09152[Crossref]
  • [8] K. Nevo-Dinur, A. Nussbaum-Shochat, S. Ben-Yehuda, O. Amster-Choder, Science 331, 1081 (2011) http://dx.doi.org/10.1126/science.1195691[Crossref]
  • [9] T.E. Kuhlman, E.C. Cox, Molec. Syst. Biol. 8, 610 (2012). http://dx.doi.org/10.1038/msb.2012.42[Crossref]
  • [10] G. Laloux, C. Jacobs-Wagner, J. Cell Biol. 201, 827 (2013) http://dx.doi.org/10.1083/jcb.201303036[Crossref]
  • [11] N.E. Broude, Molec. Microbiol. 80, 1137 (2011) http://dx.doi.org/10.1111/j.1365-2958.2011.07652.x[Crossref]
  • [12] K.C. Keiler, Curr. Opin. Microbiol. 14, 155 (2011) http://dx.doi.org/10.1016/j.mib.2011.01.009[Crossref]
  • [13] K. Nevo-Dinur, S. Govindarajan, O. Amster-Choder, Trends Genet. 28, 314 (2012) http://dx.doi.org/10.1016/j.tig.2012.03.008[Crossref]
  • [14] D.Z. Rudner, R. Losick, Cold Spring Harb. Perspect. Biol. 2, a000307 (2010) http://dx.doi.org/10.1101/cshperspect.a000307[Crossref]
  • [15] E. Evguenieva-Hackenberg, V. Roppelt, C. Lassek, G. Klug, RNA Biol. 8, 49 (2011) http://dx.doi.org/10.4161/rna.8.1.14066[Crossref]
  • [16] T. Misteli, Histochem. Cell Biol. 129, 5 (2008) http://dx.doi.org/10.1007/s00418-007-0355-x[Crossref]
  • [17] J.T. Mika, B. Poolman, Curr. Opin. Biotechnol. 22, 117 (2011) http://dx.doi.org/10.1016/j.copbio.2010.09.009[Crossref]
  • [18] M. Kumar, M.S. Mommer, V. Sourjik, Biophys. J. 98, 552 (2010) http://dx.doi.org/10.1016/j.bpj.2009.11.002[Crossref]
  • [19] S. Saberi, E. Emberly, PLoS Comput. Biol. 6, e1000986 (2010) http://dx.doi.org/10.1371/journal.pcbi.1000986[Crossref]
  • [20] S. Saberi, E. Emberly, PLoS One 8, e64075 (2013) http://dx.doi.org/10.1371/journal.pone.0064075[Crossref]
  • [21] A.-S. Coquel et al., PLoS Comput. Biol. 9, e1003038 (2013) http://dx.doi.org/10.1371/journal.pcbi.1003038[Crossref]
  • [22] T.E. Kuhlman, E.C. Cox, Phys. Rev. E 88, 022701 (2013) http://dx.doi.org/10.1103/PhysRevE.88.022701[Crossref]
  • [23] V.P. Zhdanov, Cent. Eur. J. Phys. 10, 533 (2012) http://dx.doi.org/10.2478/s11534-012-0011-5[Crossref]
  • [24] O. Pulkkinen, R. Metzler, Phys. Rev. Lett. 110, 198101 (2013) http://dx.doi.org/10.1103/PhysRevLett.110.198101[Crossref]
  • [25] V.P. Zhdanov, Chem. Phys. Lett. 458, 247 (2008) http://dx.doi.org/10.1016/j.cplett.2008.03.047[Crossref]
  • [26] P. Rashkov, B.A. Schmitt, L. Sogaard-Andersen, P. Lenz, S. Dahlke, Bull. Math. Biol. 74, 2183 (2012) http://dx.doi.org/10.1007/s11538-012-9752-y[Crossref]
  • [27] M. Kaern, T.C. Elston, W.J. Blake, J.J. Collins, Nature Rev. Genet. 6, 451 (2005) http://dx.doi.org/10.1038/nrg1615[Crossref]
  • [28] A.M. Morris, M.A. Watzky, R.G. Finke, Biochim. Biophys. Acta 1794, 375 (2009) http://dx.doi.org/10.1016/j.bbapap.2008.10.016[Crossref]
  • [29] C.J. Roberts, J. Phys. Chem. B 107, 1194 (2003) http://dx.doi.org/10.1021/jp026827s[Crossref]

Document Type

Publication order reference

Identifiers

YADDA identifier

bwmeta1.element.-psjd-doi-10_2478_s11534-014-0486-3
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