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Journal
2014 | 1 | 1 |
Article title

Peptidomics to study age-related diseases:
spotlight on cancer and neurodegeneration

Content
Title variants
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EN
Abstracts
EN
Peptides in human body fluids closely
mirror processes of protein synthesis, processing and
degradation. Since peptide levels and composition
in the circulation fluctuate in close correlation with
specific condition (either physiological or pathological)
of an individual, comprehensive peptide analysis may
unravel novel disease biomarkers or pave the way to
new diagnostic approaches. Discovery of novel peptide
biomarkers could facilitate drug development, as peptides
can be used to monitor response to drugs, and thus help
determine an optimal therapeutic dosage and assess toxic
effects. In this review, we will provide a short overview of
typical mass spectrometry-based peptidomics workflow,
and give the examples from current literature of how
peptidomics studies could potentially improve detection
and treatment of cancer and neurodegenerative diseases,
the latter including Alzheimer’s and Creutzfeldt-Jakob
disease.
Publisher

Journal
Year
Volume
1
Issue
1
Physical description
Dates
accepted
12 - 6 - 2014
received
18 - 4 - 2013
online
9 - 7 - 2014
Contributors
author
  • University of Rijeka Department of Biotechnology, Radmile Matejčić
    2, 51000 Rijeka, Croatia, msedic@biotech.uniri.hr
  • University of Rijeka Department of Biotechnology, Radmile Matejčić
    2, 51000 Rijeka, Croatia
author
  • University of Rijeka Department of Biotechnology, Radmile Matejčić
    2, 51000 Rijeka, Croatia
  • University of Rijeka Department of Biotechnology, Radmile Matejčić
    2, 51000 Rijeka, Croatia
References
  • [1] M. Soloviev, Methods Mol Biol 2010, 615, 3-9.
  • [2] T. Schuerholz, K. Brandenburg, G. Marx, Crit Care 2012, 16,207.[PubMed]
  • [3] E. Clynen, G. Baggerman, S. Husson, B. Landuyt, L. Schoofs,Expert Opin Drug Discov 2008, 3, 425-440.[PubMed]
  • [4] L.L. Y. Gao, Z. Huang, Y. Chen, W. Hang,, Anal. Methods 2011,3, 773-779.
  • [5] O.N.Y. V.T. Ivanov, O.V. Sazonova, A.G. Tolmazova, K.V.Leontiev, M.M. Philippova, A.A. Karelin, E.Y. Blishchenko,,Pure Appl. Chem. 2006, 78, 963-975.
  • [6] A.D. Tinoco, A. Saghatelian, Biochemistry 2011, 50,7447-7461.
  • [7] M.H. Elliott, D.S. Smith, C.E. Parker, C. Borchers, J MassSpectrom 2009, 44, 1637-1660.[PubMed]
  • [8] E.P. Diamandis, J Proteome Res 2006, 5, 2079-2082.[PubMed]
  • [9] P. Schulz-Knappe, H.D. Zucht, G. Heine, M. Jurgens, R. Hess,M. Schrader, Comb Chem High Throughput Screen 2001, 4,207-217.
  • [10] G.M. Fiedler, S. Baumann, A. Leichtle, A. Oltmann, J. Kase, J.Thiery, U. Ceglarek, Clin Chem 2007, 53, 421-428.[PubMed]
  • [11] R.W.S. I.V.D. Broek, J.H.H. Schellens, J.H. Beijnen, ClinProteomics 2010, 6, 115-127.[PubMed]
  • [12] M. Svensson, K. Skold, P. Svenningsson, P.E. Andren, JProteome Res 2003, 2, 213-219.[PubMed]
  • [13] J.A. Dowell, W.V. Heyden, L. Li, J Proteome Res 2006, 5,3368-3375.[PubMed]
  • [14] M. Svensson, M. Boren, K. Skold, M. Falth, B. Sjogren, M.Andersson, P. Svenningsson, P.E. Andren, J Proteome Res2009, 8, 974-981.
  • [15] X. Wei, L. Li, Int J Clin Exp Pathol 2009, 2, 132-148.[PubMed]
  • [16] N.L. Anderson, N.G. Anderson, Mol Cell Proteomics 2002, 1,845-867.
  • [17] I. Safarik, M. Safarikova, Biomagn Res Technol 2004, 2, 7.
  • [18] I. Finoulst, M. Pinkse, W. Van Dongen, P. Verhaert, J BiomedBiotechnol 2011, 2011, 245291.[PubMed]
  • [19] B. Domon, R. Aebersold, Science 2006, 312, 212-217.
  • [20] M. Herrero, E. Ibanez, A. Cifuentes, Electrophoresis 2008, 29,2148-2160.
  • [21] H. Jahn, S. Wittke, P. Zurbig, T.J. Raedler, S. Arlt, M. Kellmann,W. Mullen, M. Eichenlaub, H. Mischak, K. Wiedemann, PLoSOne 2011, 6, e26540.
  • [22] H. Tammen, H.D. Zucht, P. Budde, Cancer Lett 2007, 249,80-86.
  • [23] M. Schrader, P. Schulz-Knappe, Trends Biotechnol 2001, 19,S55-60.
  • [24] H. Tammen, R. Hess, S. Uckert, A.J. Becker, C.G. Stief, P.S.Knappe, M. Schrader, U. Jonas, Urology 2002, 59, 784-789.
  • [25] H. Tammen, H. Kreipe, R. Hess, M. Kellmann, U. Lehmann, A.Pich, N. Lamping, P. Schulz-Knappe, H.D. Zucht, R. Lilischkis,Breast Cancer Res Treat 2003, 79, 83-93.
  • [26] I.A. Papayannopoulos, Mass Spectrom Rev 1995, 14, 49-73.
  • [27] D.M. Good, P. Zurbig, A. Argiles, H.W. Bauer, G. Behrens, J.J.Coon, M. Dakna, S. Decramer, C. Delles, A.F. Dominiczak, J.H.Ehrich, F. Eitner, D. Fliser, M. Frommberger, A. Ganser, M.A.Girolami, I. Golovko, W. Gwinner, M. Haubitz, S. Herget-Rosenthal, J. Jankowski, H. Jahn, G. Jerums, B.A. Julian, M.Kellmann, V. Kliem, W. Kolch, A.S. Krolewski, M. Luppi, Z. Massy, M. Melter, C. Neususs, J. Novak, K. Peter, K. Rossing,H. Rupprecht, J.P. Schanstra, E. Schiffer, J.U. Stolzenburg, L.Tarnow, D. Theodorescu, V. Thongboonkerd, R. Vanholder,E.M. Weissinger, H. Mischak, P. Schmitt-Kopplin, Mol CellProteomics 2010, 9, 2424-2437.
  • [28] H. Mischak, B.A. Julian, J. Novak, Proteomics Clin Appl 2007,1, 792.
  • [29] K. Sasaki, T. Osaki, N. Minamino, Mol Cell Proteomics 2013,12, 700-709.
  • [30] D.F. Hunt, J.R. Yates, 3rd, J. Shabanowitz, S. Winston, C.R.Hauer, Proc Natl Acad Sci U S A 1986, 83, 6233-6237.
  • [31] M.L. Nielsen, M.M. Savitski, R.A. Zubarev, Mol Cell Proteomics2005, 4, 835-845.
  • [32] B. Domon, B. Bodenmiller, C. Carapito, Z. Hao, A. Huehmer, R.Aebersold, J Proteome Res 2009, 8, 2633-2639.
  • [33] C. Stingl, C. Ihling, G. Ammerer, A. Sinz, K. Mechtler, BiochimBiophys Acta 2006, 1764, 1842-1852.
  • [34] R.I. Viner, T. Zhang, T. Second, V. Zabrouskov, J Proteomics2009, 72, 874-885.
  • [35] S.L. Cook, C.M. Zimmermann, D. Singer, M. Fedorova, R.Hoffmann, G.P. Jackson, J Mass Spectrom 2012, 47, 786-794.
  • [36] S. Pan, R. Aebersold, Methods Mol Biol 2007, 367, 209-218.
  • [37] S.E. Ong, B. Blagoev, I. Kratchmarova, D.B. Kristensen, H.Steen, A. Pandey, M. Mann, Mol Cell Proteomics 2002, 1,376-386.
  • [38] S.P. Gygi, B. Rist, S.A. Gerber, F. Turecek, M.H. Gelb, R.Aebersold, Nat Biotechnol 1999, 17, 994-999.
  • [39] P.L. Ross, Y.N. Huang, J.N. Marchese, B. Williamson, K.Parker, S. Hattan, N. Khainovski, S. Pillai, S. Dey, S. Daniels,S. Purkayastha, P. Juhasz, S. Martin, M. Bartlet-Jones, F.He, A. Jacobson, D.J. Pappin, Mol Cell Proteomics 2004, 3,1154-1169.
  • [40] X. Yao, A. Freas, J. Ramirez, P.A. Demirev, C. Fenselau, AnalChem 2001, 73, 2836-2842.
  • [41] M. Bantscheff, M. Schirle, G. Sweetman, J. Rick, B. Kuster,Anal Bioanal Chem 2007, 389, 1017-1031.
  • [42] R. Ossola, R. Schiess, P. Picotti, O. Rinner, L. Reiter, R.Aebersold, Methods Mol Biol 2011, 728, 179-194.
  • [43] C. Krisp, S.A. Randall, M.J. McKay, M.P. Molloy, ProteomicsClin Appl 2012, 6, 42-59.
  • [44] V. Lange, P. Picotti, B. Domon, R. Aebersold, Mol Syst Biol2008, 4, 222.
  • [45] S.W. Holman, P.F. Sims, C.E. Eyers, Bioanalysis 2012, 4,1763-1786.
  • [46] K. Ueda, N. Saichi, S. Takami, D. Kang, A. Toyama, Y. Daigo, N.Ishikawa, N. Kohno, K. Tamura, T. Shuin, M. Nakayama, T.A.Sato, Y. Nakamura, H. Nakagawa, PLoS One 2011, 6, e18567.
  • [47] M. Cohen, R. Yossef, T. Erez, A. Kugel, M. Welt, M.M.Karpasas, J. Bones, P.M. Rudd, J. Taieb, H. Boissin, D. Harats,K. Noy, Y. Tekoah, R.G. Lichtenstein, E. Rubin, A. Porgador,PLoS One 2011, 6, e14540.
  • [48] C. Fredolini, F. Meani, A. Luchini, W. Zhou, P. Russo, M.Ross, A. Patanarut, D. Tamburro, G. Gambara, D. Ornstein,F. Odicino, M. Ragnoli, A. Ravaggi, F. Novelli, D. Collura,L. D’Urso, G. Muto, C. Belluco, S. Pecorelli, L. Liotta, E.F.Petricoin, 3rd, AAPS J 2010, 12, 504-518.[Crossref]
  • [49] A.P. Putzke, A.P. Ventura, A.M. Bailey, C. Akture, J.Opoku-Ansah, M. Celiktas, M.S. Hwang, D.S. Darling, I.M.Coleman, P.S. Nelson, H.M. Nguyen, E. Corey, M. Tewari, C.Morrissey, R.L. Vessella, B.S. Knudsen, Am J Pathol 2011, 179,400-410.
  • [50] C.R. Cooper, C.H. Chay, K.J. Pienta, Neoplasia 2002, 4,191-194.
  • [51] R. Kuefer, M.D. Hofer, J.E. Gschwend, K.J. Pienta, M.G. Sanda,A.M. Chinnaiyan, M.A. Rubin, M.L. Day, Clin Cancer Res 2003,9, 6447-6452.
  • [52] G.M. Fiedler, A.B. Leichtle, J. Kase, S. Baumann, U. Ceglarek,K. Felix, T. Conrad, H. Witzigmann, A. Weimann, C. Schutte,J. Hauss, M. Buchler, J. Thiery, Clin Cancer Res 2009, 15,3812-3819.
  • [53] E. Zapico-Muniz, A. Farre-Viladrich, N. Rico-Santana, F.Gonzalez-Sastre, J. Mora-Brugues, Pancreas 2010, 39,1293-1298.
  • [54] N.J. Fan, C.F. Gao, G. Zhao, X.L. Wang, L. Qiao, Biotechnol ApplBiochem 2012, 59, 276-282.
  • [55] N.J. Fan, C.F. Gao, G. Zhao, X.L. Wang, Q.Y. Liu, Diagn Pathol2012, 7, 45.
  • [56] N.J. Fan, C.F. Gao, X.L. Wang, G. Zhao, Q.Y. Liu, Y.Y. Zhang, B.G.Cheng, J Biomed Biotechnol 2012, 2012, 985020.
  • [57] E. Gianazza, C. Chinello, V. Mainini, M. Cazzaniga, V. Squeo,G. Albo, S. Signorini, S.S. Di Pierro, S. Ferrero, S. Nicolardi,Y.E. van der Burgt, A.M. Deelder, F. Magni, J Proteomics 2012,76 Spec No., 125-140.[Crossref]
  • [58] X. Ying, S.X. Han, J.L. Wang, X. Zhou, G.H. Jin, L. Jin, H. Wang,L. Wu, J. Zhang, Q. Zhu, Diagn Pathol 2013, 8, 130.
  • [59] J. Yang, Y.C. Song, C.X. Dang, T.S. Song, Z.G. Liu, Y.M. Guo,Z.F. Li, C. Huang, Clin Exp Med 2012, 12, 79-87.
  • [60] J. Yang, Y.C. Song, T.S. Song, X.Y. Hu, Y.M. Guo, Z.F. Li, C.X.Dang, C. Huang, J Clin Lab Anal 2012, 26, 148-154.
  • [61] J. Villanueva, A.J. Martorella, K. Lawlor, J. Philip, M. Fleisher,R.J. Robbins, P. Tempst, Mol Cell Proteomics 2006, 5,1840-1852.
  • [62] W.C. Chang, P.I. Hsu, Y.Y. Chen, M. Hsiao, P.J. Lu, C.H. Chen,Proteomics Clin Appl 2008, 2, 55-62.
  • [63] M.U. Schuhmann, H.D. Zucht, R. Nassimi, G. Heine, C.G.Schneekloth, H.J. Stuerenburg, H. Selle, Eur J Surg Oncol2010, 36, 201-207.
  • [64] J. Voortman, T.V. Pham, J.C. Knol, G. Giaccone, C.R. Jimenez,Proteome Sci 2009, 7, 34.
  • [65] V. Dutoit, C. Herold-Mende, N. Hilf, O. Schoor, P. Beckhove,J. Bucher, K. Dorsch, S. Flohr, J. Fritsche, P. Lewandrowski, J.Lohr, H.G. Rammensee, S. Stevanovic, C. Trautwein, V. Vass,S. Walter, P.R. Walker, T. Weinschenk, H. Singh-Jasuja, P.Y.Dietrich, Brain 2012, 135, 1042-1054.
  • [66] F. Traub, M. Jost, R. Hess, K. Schorn, C. Menzel, P. Budde, P.Schulz-Knappe, N. Lamping, A. Pich, H. Kreipe, H. Tammen,Lab Invest 2006, 86, 246-253.
  • [67] M.F. Mazurek, S. Garside, M.F. Beal, Ann Neurol 1997, 41,540-547.
  • [68] A. Fernandez, M.L. de Ceballos, S. Rose, P. Jenner, C.D.Marsden, Brain 1996, 119 ( Pt 3), 823-830.
  • [69] D. Wijte, L.A. McDonnell, C.I. Balog, K. Bossers, A.M. Deelder,D.F. Swaab, J. Verhaagen, O.A. Mayboroda, Methods 2012, 56,500-507.
  • [70] W. Thies, L. Bleiler, A. Alzheimer’s, Alzheimers Dement 2013,9, 208-245.
  • [71] J. Guevara, B. Espinosa, E. Zenteno, L. Vazguez, J. Luna, G.Perry, R. Mena, J Neuropathol Exp Neurol 1998, 57, 905-914.
  • [72] K. Kanninen, G. Goldsteins, S. Auriola, I. Alafuzoff, J.Koistinaho, Neurosci Lett 2004, 367, 235-240.
  • [73] H. Selle, J. Lamerz, K. Buerger, A. Dessauer, K. Hager, H.Hampel, J. Karl, M. Kellmann, L. Lannfelt, J. Louhija, M. Riepe,W. Rollinger, H. Tumani, M. Schrader, H.D. Zucht, Comb ChemHigh Throughput Screen 2005, 8, 801-806.
  • [74] C. Chen, D. Xiao, W. Zhou, Y.C. Zhang, Q. Shi, C. Tian, J. Zhang,C.X. Zhou, J.Z. Zhang, X.P. Dong, Prion 2012, 6, 46-51.
  • [75] K. Biskup, E.I. Braicu, J. Sehouli, C. Fotopoulou, R. Tauber, M.Berger, V. Blanchard, J Proteome Res 2013, 12, 4056-4063.
Document Type
Publication order reference
Identifiers
YADDA identifier
bwmeta1.element.-psjd-doi-10_2478_ped-2014-0006
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