Normally the productivity of cropping systems in arid and semi- arid regions is very low. The sustainable agricultural systems try to find out environmental friendly technologies based on physical and biological treatments to increase crop production. In this study two irrigation treatments (control and water stress) and six methods of fertilizer treatment (control, NPK-F, using magnetic band- M, using silver nano particles- N, M+N and M+N+50% F) on performance of ajowan were compared. Results showed that treatments with magnetic field or base fertilizer had more yield compared to the control and silver nanoparticles (N) treatments. Application of silver nanoparticles had no positive effect on yield. The highest seed and biomass WUE achieved in base fertilizer or magnetic field treatments. Under water stress treatment, seed WUE significantly increased. In conclusion magnetic field exposure, probably by encourage nutrient uptake efficiency could be applied to reduce fertilizer requirement. On the other hand the cultivation of plants under low MF could be an alternative way of WUE improving.